compbioagent-explorer

SkillAI & models

An LLM-powered web application for single-cell RNA-seq data exploration, integrating with CellDepot and Cellxgene VIP.

Instructions available. Your AI can read the instructions. Execution depends on the setup they require.

Account requirements not reviewed. Check the skill instructions before use; ahel provides instructions and does not run this skill.

Add ahel to your AI once: Claude, ChatGPT, Cursor, Claude Code or Codex. Then ask it to use this.

Then ask your AI: use the compbioagent-explorer skill

About this skill

The largest open-source medical AI skills library for OpenClaw🦞.

What this skill tells your AI

The instructions your AI receives, as published by freedomintelligence/openclaw-medical-skills in skills/compbioagent-explorer/SKILL.md and read by ahel’s review.

name: compbioagent-explorer description: scRNA-seq Explorer keywords:

single-cell
visualization
web-app
cellxgene
exploration measurable_outcome: Launch a local web instance for interactive scRNA-seq exploration and generate 3+ custom visualizations per session. license: MIT metadata: author: CompBioAgent Team version: "1.0.0" compatibility:
system: Python 3.9+ allowed-tools:
run_shell_command
web_fetch

An LLM-powered web application for single-cell RNA-seq data exploration, integrating with CellDepot and Cellxgene VIP.

Interactive Exploration: When you need to visually explore a dataset without writing code.
Hypothesis Generation: Quickly checking expression of specific markers across clusters.
Sharing: Presenting data to non-computational collaborators.

Natural Language Querying: "Show me the expression of TP53 in the B-cell cluster."
Cellxgene Integration: Leverages robust visualization tools.
Data Integration: Connects with CellDepot for dataset retrieval.

Setup: pip install compbioagent.
Launch: compbioagent start --data ./data.h5ad.
Interact: Open the local URL (e.g., http://localhost:8050) and chat with the agent to generate plots.

User: "Launch the explorer for my kidney dataset."

Agent Action:

compbioagent launch --port 8080 --data ./kidney_atlas.h5ad

Automated review, not a security audit. Ruleset v1+k2.

Advanced