encode-toolkit

MCP serverSearch

Once added, your AI can search, download, and run pipelines on genomics data from the ENCODE Project. The integration brings 20 tools and 48 skills built for that purpose. It suits anyone who needs to find or work with ENCODE genomics data.

Unavailable. This server has no hosted endpoint yet, so Ahel can't serve it.

Add to setup to save this item as a reference. Ahel cannot run it, and signing in will not install it.

What your AI can do with it

  • Search the ENCODE Project for genomics data
  • Download genomics files and datasets
  • Run analysis pipelines on ENCODE data
  • Draw on 20 tools and 48 skills for genomics work

Getting started

  1. Save this item in Your setup as a reference.
  2. Read the source or reference documentation for its setup requirements. Saving it here does not connect it to your AI.
  3. Check this page for availability before trying to install it through Ahel.

From the project's README

As published by ammawla/encode-toolkit in README.md. This repository publishes several servers, so only the opening is shown here.

[![smithery badge](https://smithery.

Shortened here. Read the whole README on GitHub.

Signals

GitHub stars
21
Forks
5
Last commit
Sep 2026
Weekly downloads
84
Weekly_downloads
60 weekly_downloads
Advanced
Delivery
encode-toolkit MCP server → your Ahel connector (mcp.ahel.ai) → your AI.
Item type
mcp-server
Key
io-github-ammawla-encode-toolkit
Source
github.com/ammawla/encode-toolkit