BioMASS

MCP serverAI & models

Lets your agent build, inspect, visualize, and simulate ODE models for biological systems.

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About this server

Construct, inspect, visualize, and simulate evidence-backed ODE models with BioMASS

Getting started

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As published by marcorusc/mcp-biomodelling-servers in README.md. This repository publishes several servers, so only the opening is shown here.

This package provides three stateful Model Context Protocol servers for mechanistic and systems-biology modelling:

Server	Modelling role	Upstream project	MCP Registry name
MaBoSS	Configure, simulate, and analyze stochastic Boolean models	pyMaBoSS	`io.github.marcorusc/MaBoSS`
NeKo	Build and analyze signalling networks from interaction databases	NeKo	`io.github.marcorusc/NeKo`
PhysiCell	Build, inspect, and export PhysiCell and PhysiBoSS configuration files	PhysiCell-settings	`io.github.marcorusc/PhysiCell`

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