MCPmed Bioinformatics Web Services

SkillWeb & browsing

Model Context Protocol (MCP) server for bioinformatics web services like GEO, STRING, and UCSC Cell Browser.

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Add ahel to your AI once: Claude, ChatGPT, Cursor, Claude Code or Codex. Then ask it to use this.

Then ask your AI: use the MCPmed Bioinformatics Web Services skill

What this skill tells your AI

The instructions your AI receives, as published by freedomintelligence/openclaw-medical-skills in skills/mcpmed-bioinformatics-server/SKILL.md and read by ahel’s review.

Adapts the Model Context Protocol (MCP) to bioinformatics web server backends. This creates a standardized, machine-actionable layer for LLMs to interact with external biological resources, matching the 2026 standard for agentic tools.

When to Use This Skill

"Query STRING database for protein-protein interactions via MCP"
"Fetch dataset metadata from GEO using MCPmed"
"Access UCSC Cell Browser data through MCP"

Core Capabilities

GEO Integration: Search and retrieve Gene Expression Omnibus metadata autonomously.
STRING DB Access: Query protein-protein interaction networks contextually.
UCSC Cell Browser: Programmatic access to single-cell datasets.

Workflow

Step 1: Start the MCPmed server to expose the bioinformatics backend tools.
Step 2: Connect the LLM client using MCP to query the integrated databases.

Example Usage

User: "Query the STRING database for interactions with TP53."

Agent Action:

python3 -m mcpmed.cli query string --gene TP53

Advanced

Item type: skill
Key: mcpmed-bioinformatics-server
Source: github.com/freedomintelligence/openclaw-medical-skills

github.com/freedomintelligence/openclaw-medical-skills