Protein Structure Prediction

SkillAI & models

Use ESMFold model to predict 3D structure of the input protein sequence.

Available today. Use it from your connected AI after setup.

Connect ahel once, and every AI you use reads what you have installed.

Then ask your AI: use the Protein Structure Prediction skill

What this skill tells your AI

The instructions your AI receives, as published by internscience/molclaw in skills/L1_tools/molclaw-esmfold/SKILL.md and read by ahel’s review.

Note:

  • Local files are not directly accessible by the server. Please upload them to the server using molclaw-file-transfer before execution.
  • For PDB file inputs, it is recommended to preprocess them using molclaw-pdbfixer before execution.
  • Please refer to skill molclaw-scp-server to complete tool invocation.

The description of tool pred_protein_structure_esmfold.

Use the ESMFold model for protein 3D structure prediction.
Args:
    sequence (str): Protein sequence
Return:
    status: success/error
    msg: message
    pdb_path (str): The predicted pdb file path

How to use tool pred_protein_structure_esmfold :

response = await client.session.call_tool(
    "pred_protein_structure_esmfold",
    arguments={
        "sequence": sequence
    }
)
result = client.parse_result(response)
pred_protein_structure = result["pdb_path"]

Signals

GitHub stars
33
Forks
3
Last commit
Aug 2026
Advanced
Catalog kind
skill
Gateway key
molclaw-esmfold
Source
github.com/internscience/molclaw