Nextflow Pipeline Executor Skill

SkillDev tools

Nextflow workflow management skill for reproducible bioinformatics pipelines

Instructions available. Your AI can read the instructions. Execution depends on the setup they require.

Account requirements not reviewed. Check the skill instructions before use; ahel provides instructions and does not run this skill.

Add ahel to your AI once: Claude, ChatGPT, Cursor, Claude Code or Codex. Then ask it to use this.

Then ask your AI: use the Nextflow Pipeline Executor Skill skill

What this skill tells your AI

The instructions your AI receives, as published by a5c-ai/babysitter in library/specializations/domains/science/bioinformatics/skills/nextflow-pipeline-executor/SKILL.md and read by ahel’s review.

Purpose

Provide Nextflow workflow management for reproducible bioinformatics pipelines.

Capabilities

DSL2 workflow execution
Container integration (Docker/Singularity)
Cloud execution (AWS, GCP, Azure)
Pipeline parameterization
Resume and caching
Execution reports and timelines

Usage Guidelines

Use DSL2 for modular pipelines
Containerize processes for reproducibility
Configure for target execution environment
Enable resume for fault tolerance
Generate execution reports
Document pipeline versions

Dependencies

Nextflow
nf-core
Snakemake

Process Integration

Reproducible Research Workflow (reproducible-research)
Analysis Pipeline Validation (pipeline-validation)
All analysis pipelines

Signals

GitHub stars: 2k
Forks: 112
Last commit: Sep 2026

Advanced

Item type: skill
Key: nextflow-pipeline-executor
Source: github.com/a5c-ai/babysitter

github.com/a5c-ai/babysitter