Numerical Methods Guide
SkillDev toolsApply numerical methods and scientific computing techniques
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The instructions your AI receives, as published by brycewang-stanford/auto-empirical-research-skills in skills/43-wentorai-research-plugins/skills/domains/math/numerical-methods-guide/SKILL.md and read by ahel’s review.
A skill for applying numerical methods in scientific computing and research. Covers root finding, numerical integration, ODE solvers, optimization, interpolation, and error analysis with practical implementations in Python.
Root Finding
Newton's Method and Alternatives
import numpy as np
def newton_method(f, df, x0: float, tol: float = 1e-10,
max_iter: int = 100) -> dict:
"""
Newton's method for finding roots of f(x) = 0.
Args:
f: Function whose root we seek
df: Derivative of f
x0: Initial guess
tol: Convergence tolerance
max_iter: Maximum iterations
"""
x = x0
history = [x]
for i in range(max_iter):
fx = f(x)
dfx = df(x)
if abs(dfx) < 1e-15:
return {"root": x, "converged": False,
"reason": "Zero derivative encountered"}
x_new = x - fx / dfx
history.append(x_new)
if abs(x_new - x) < tol:
return {
"root": x_new,
"converged": True,
"iterations": i + 1,
"f_at_root": f(x_new),
"convergence": "quadratic"
}
x = x_new
return {"root": x, "converged": False, "reason": "Max iterations reached"}
Method Selection Guide
| Method | Convergence | Requires | Robustness |
|---|---|---|---|
| Bisection | Linear (slow) | Bracketing interval | Very robust |
| Newton | Quadratic (fast) | Derivative | May diverge |
| Secant | Superlinear (~1.62) | Two initial guesses | Moderate |
| Brent | Superlinear | Bracketing interval | Very robust |
Numerical Integration
Quadrature Methods
from scipy import integrate
def numerical_integration_comparison(f, a: float, b: float) -> dict:
"""
Compare numerical integration methods.
Args:
f: Function to integrate
a: Lower bound
b: Upper bound
"""
# Adaptive Gaussian quadrature (recommended default)
quad_result, quad_error = integrate.quad(f, a, b)
# Simpson's rule (fixed-point)
n_points = 101
x = np.linspace(a, b, n_points)
simps_result = integrate.simpson(f(x), x=x)
# Romberg integration
romb_result = integrate.romberg(f, a, b)
return {
"quad": {"value": quad_result, "error_estimate": quad_error},
"simpson": {"value": simps_result, "n_points": n_points},
"romberg": {"value": romb_result},
"recommendation": (
"Use scipy.integrate.quad for most cases. "
"It adaptively chooses points for accuracy."
)
}
Ordinary Differential Equations
Solving Initial Value Problems
from scipy.integrate import solve_ivp
def solve_ode_system(f, t_span: tuple, y0: list,
method: str = "RK45") -> dict:
"""
Solve a system of ODEs: dy/dt = f(t, y).
Args:
f: Right-hand side function f(t, y)
t_span: (t_start, t_end)
y0: Initial conditions
method: Solver method (RK45, RK23, Radau, BDF, LSODA)
"""
sol = solve_ivp(
f, t_span, y0,
method=method,
dense_output=True,
rtol=1e-8,
atol=1e-10
)
return {
"success": sol.success,
"message": sol.message,
"t": sol.t,
"y": sol.y,
"n_evaluations": sol.nfev,
"method_used": method
}
# Example: Lorenz system (chaotic dynamics)
def lorenz(t, state, sigma=10, rho=28, beta=8/3):
x, y, z = state
return [
sigma * (y - x),
x * (rho - z) - y,
x * y - beta * z
]
result = solve_ode_system(lorenz, (0, 50), [1.0, 1.0, 1.0])
Solver Selection
Non-stiff problems:
RK45 (default): 4th/5th order Runge-Kutta, adaptive step
RK23: Lower order, useful for less smooth problems
DOP853: High-order, excellent for smooth problems
Stiff problems:
Radau: Implicit Runge-Kutta, good for stiff systems
BDF: Backward differentiation formula (classic stiff solver)
LSODA: Automatically switches between non-stiff and stiff
How to tell if your problem is stiff:
- RK45 takes many tiny steps or fails to converge
- The system has widely separated time scales
- Chemical kinetics, circuit simulations often stiff
Optimization
Minimization Methods
from scipy.optimize import minimize
def optimize_with_comparison(f, x0: np.ndarray,
bounds: list = None) -> dict:
"""
Compare optimization methods on a given objective function.
Args:
f: Objective function to minimize
x0: Initial guess
bounds: List of (min, max) tuples for each variable
"""
results = {}
# Gradient-free
res_nm = minimize(f, x0, method="Nelder-Mead")
results["Nelder-Mead"] = {"x": res_nm.x, "fun": res_nm.fun,
"nfev": res_nm.nfev}
# Gradient-based (quasi-Newton)
res_bfgs = minimize(f, x0, method="L-BFGS-B", bounds=bounds)
results["L-BFGS-B"] = {"x": res_bfgs.x, "fun": res_bfgs.fun,
"nfev": res_bfgs.nfev}
return results
Error Analysis
Sources of Numerical Error
1. Rounding error:
Finite precision arithmetic (float64 has ~16 significant digits)
Accumulates in long computations
2. Truncation error:
Error from approximating continuous math with discrete formulas
Example: Finite difference df/dx ~ (f(x+h) - f(x)) / h
3. Conditioning:
Sensitivity of the result to perturbations in input
Condition number quantifies this amplification
Best practice: Always compare your numerical solution against
analytical solutions (when available) or use convergence studies
(refine the discretization and check if the answer converges).
When publishing numerical results, report the method used, convergence criteria, error tolerances, grid resolution (for PDEs), and validate against known test cases. Provide code so readers can reproduce your computations.
Signals
- GitHub stars
- 4k
- Forks
- 531
- Last commit
- Sep 2026
Advanced
- Item type
- skill
- Key
numerical-methods-guide- Source
- github.com/brycewang-stanford/auto-empirical-research-skills
github.com/brycewang-stanford/auto-empirical-research-skills
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