Obsidian Project Bootstrap
SkillDocs & knowledgeThis skill should be used when the user asks to start a new research project, import an existing code-plus-Markdown repository into Obsidian, or bind the current repository to a compact research knowledge base for future syncing.
Instructions available. Your AI can read the instructions. Execution depends on the setup they require.
Account requirements not reviewed. Check the skill instructions before use; ahel provides instructions and does not run this skill.
Add ahel to your AI once: Claude, ChatGPT, Cursor, Claude Code or Codex. Then ask it to use this.
Then ask your AI: use the Obsidian Project Bootstrap skill
What this skill tells your AI
The instructions your AI receives, as published by brycewang-stanford/auto-empirical-research-skills in skills/33-Galaxy-Dawn-claude-scholar/skills/obsidian-project-bootstrap/SKILL.md and read by ahel’s review.
Bootstrap a project knowledge base for the current repository.
Role in the workflow
This is a supporting skill.
Use obsidian-project-memory as the main workflow authority. Use this skill only when a repository still needs its initial binding or rebuild.
When to use
- The user says “start a new research project”.
- The user has an existing repo with code plus Markdown and wants an Obsidian knowledge base generated automatically.
obsidian-project-memorydetects a research-project candidate but no existing binding.
Required input
Resolve the vault path from one of:
- explicit user input,
OBSIDIAN_VAULT_PATH.
Procedure
- Identify the repository root.
- Run a preflight detect step first:
python3 "${CLAUDE_PLUGIN_ROOT}/skills/obsidian-project-memory/scripts/project_kb.py" detect --cwd "$PWD" - Only if the repo is unbound and should be imported, run bootstrap:
python3 "${CLAUDE_PLUGIN_ROOT}/skills/obsidian-project-memory/scripts/project_kb.py" bootstrap --cwd "$PWD" --vault-path "$OBSIDIAN_VAULT_PATH" - Verify that bootstrap created at least:
.claude/project-memory/registry.yaml.claude/project-memory/<project_id>.mdResearch/{project-slug}/00-Hub.mdResearch/{project-slug}/01-Plan.mdResearch/{project-slug}/Knowledge/Source-Inventory.mdResearch/{project-slug}/Knowledge/Codebase-Overview.md
- If the imported project still lacks real background or experiment context, switch to an agent-first pass:
- read the most informative repo docs and code entry points,
- synthesize durable notes into
Knowledge/,Papers/,Experiments/,Results/, orWriting/, - avoid placeholder notes.
- Summarize the created knowledge base and the next recommended canonical notes to fill in.
Notes
- The bootstrap process imports structure and summaries, not raw datasets, caches, checkpoints, or the whole code tree.
- Ignore
.git,.venv,node_modules, caches, checkpoints, binaries, and other heavy artifacts. - The default vault is compact:
00-Hub.md,01-Plan.md,Knowledge/,Papers/,Experiments/,Results/,Writing/,Daily/,Archive/. - If
python3is unavailable in the current shell, use the system Python interpreter that can runproject_kb.pyand say so explicitly.
References
references/BOOTSTRAP-RUNBOOK.md- preflight decisions, failure modes, and post-bootstrap verification
Signals
- GitHub stars
- 4k
- Forks
- 531
- Last commit
- Sep 2026
Advanced
- Item type
- skill
- Key
obsidian-project-bootstrap- Source
- github.com/brycewang-stanford/auto-empirical-research-skills
github.com/brycewang-stanford/auto-empirical-research-skills
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