PharmGKB Annotator Skill

SkillDev tools

PharmGKB pharmacogenomics annotation skill for drug-gene interaction assessment

Instructions available. Your AI can read the instructions. Execution depends on the setup they require.

Account requirements not reviewed. Check the skill instructions before use; ahel provides instructions and does not run this skill.

Add ahel to your AI once: Claude, ChatGPT, Cursor, Claude Code or Codex. Then ask it to use this.

Then ask your AI: use the PharmGKB Annotator Skill skill

What this skill tells your AI

The instructions your AI receives, as published by a5c-ai/babysitter in library/specializations/domains/science/bioinformatics/skills/pharmgkb-annotator/SKILL.md and read by ahel’s review.

Purpose

Provide PharmGKB pharmacogenomics annotation for drug-gene interaction assessment.

Capabilities

Star allele calling (Stargazer)
Diplotype determination
CPIC guideline integration
Drug recommendation generation
Clinical annotation lookup
Dosing guidance extraction

Usage Guidelines

Call star alleles accurately
Determine diplotypes from genotypes
Apply CPIC guidelines for dosing
Generate actionable recommendations
Review clinical annotations
Document guideline versions

Dependencies

PharmGKB API
Stargazer
PharmCAT

Process Integration

Pharmacogenomics Analysis (pharmacogenomics-analysis)
Clinical Variant Interpretation (clinical-variant-interpretation)

Signals

GitHub stars: 2k
Forks: 112
Last commit: Sep 2026

Advanced

Item type: skill
Key: pharmgkb-annotator
Source: github.com/a5c-ai/babysitter

github.com/a5c-ai/babysitter