psi4-single-point-energy

SkillDev tools

Use this skill to run a deterministic Psi4 single-point Hartree-Fock energy on a tiny water molecule. Do not use it for production quantum chemistry benchmarking or large basis-set studies.

Available today. Use it from your connected AI after setup.

Connect ahel once, and every AI you use reads what you have installed.

Then ask your AI: use the psi4-single-point-energy skill

What this skill tells your AI

The instructions your AI receives, as published by ma-compbio-lab/skillfoundry in skills/computational-chemistry-and-molecular-simulation/psi4-single-point-energy/SKILL.md and read by ahel’s review.

Purpose

Provide a minimal, runnable Psi4 starter that computes one deterministic single-point energy for a bundled water geometry and records the result as compact JSON.

When to use

  • You need a verified local Psi4 entry point.
  • You want a tiny quantum-chemistry smoke calculation before scaling to larger molecules or better methods.
  • You need a deterministic summary that can be tested in CI-like local workflows.

When not to use

  • You need high-accuracy energetics, conformer searches, or production optimizations.
  • You need solvent models, post-HF methods, or large basis sets.

Inputs

  • Optional output JSON path
  • Optional method and basis, defaulting to hf and sto-3g

Outputs

  • JSON summary with Psi4 version, job label, molecule metadata, and single-point energy in Hartree

Requirements

  • slurm/envs/psi4 with Psi4 installed

Procedure

  1. Run slurm/envs/psi4/bin/python skills/computational-chemistry-and-molecular-simulation/psi4-single-point-energy/scripts/run_psi4_single_point.py --out skills/computational-chemistry-and-molecular-simulation/psi4-single-point-energy/assets/water_hf_sto3g_summary.json.
  2. Confirm the output reports psi4_version, method, basis, and a negative energy_hartree.
  3. Reuse the script as a seed for larger Psi4 workflows after validating the dedicated prefix.

Validation

  • The command exits successfully under slurm/envs/psi4/bin/python.
  • The result reports a 3-atom water molecule.
  • The hf/sto-3g energy is reproducible for the bundled geometry.

Failure modes and fixes

  • Missing Psi4 prefix: install or reactivate slurm/envs/psi4.
  • Import failure: confirm the script is run with slurm/envs/psi4/bin/python, not the base interpreter.
  • Numerical drift after edits: reset the geometry, method, basis, and thread count to the bundled defaults.

Safety and limits

  • Educational starter only.
  • The bundled water calculation is intentionally tiny and not suitable for scientific claims by itself.

Provenance

Related skills

  • openmm-system-minimization

Signals

GitHub stars
39
Forks
5
Last commit
Sep 2026
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Catalog kind
skill
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psi4-single-point-energy
Source
github.com/ma-compbio-lab/skillfoundry