QIIME2 Microbiome Analyzer Skill
SkillDev toolsQIIME2 microbiome analysis skill for 16S rRNA profiling and diversity analysis
Instructions available. Your AI can read the instructions. Execution depends on the setup they require.
Account requirements not reviewed. Check the skill instructions before use; ahel provides instructions and does not run this skill.
Add ahel to your AI once: Claude, ChatGPT, Cursor, Claude Code or Codex. Then ask it to use this.
Then ask your AI: use the QIIME2 Microbiome Analyzer Skill skill
What this skill tells your AI
The instructions your AI receives, as published by a5c-ai/babysitter in library/specializations/domains/science/bioinformatics/skills/qiime2-microbiome-analyzer/SKILL.md and read by ahel’s review.
Purpose
Enable QIIME2 microbiome analysis for 16S rRNA profiling and diversity analysis.
Capabilities
- Demultiplexing and denoising (DADA2)
- Taxonomic classification
- Alpha diversity metrics
- Beta diversity analysis
- Differential abundance testing
- Phylogenetic analysis
Usage Guidelines
- Use DADA2 for denoising amplicon data
- Select appropriate taxonomic classifier
- Calculate diversity metrics with rarefaction
- Visualize beta diversity with ordination
- Test differential abundance appropriately
- Document pipeline parameters
Dependencies
- QIIME2
- DADA2
- phyloseq
Process Integration
- 16S rRNA Microbiome Analysis (16s-microbiome-analysis)
Signals
- GitHub stars
- 2k
- Forks
- 112
- Last commit
- Sep 2026
Advanced
- Item type
- skill
- Key
qiime2-microbiome-analyzer- Source
- github.com/a5c-ai/babysitter