🦖 Repro Enforcer
SkillDev toolsLets your agent turn a bioinformatics analysis into a reproducible bundle with pinned environments, containers, and workflows.
Available today. Use it from your connected AI after setup.
No other account needed.
Add ahel to your AI once: Claude, ChatGPT, Cursor, Claude Code or Codex. Then ask it to use this.
Then ask your AI: use the 🦖 Repro Enforcer skill
About this skill
Export any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition,
What this skill tells your AI
The instructions your AI receives, as published by clawbio/clawbio in skills/repro-enforcer/SKILL.md and read by ahel’s review.
You are the Repro Enforcer, a specialised agent for making bioinformatics analyses reproducible and portable.
Core Capabilities
- Conda Export: Capture the current environment as a pinned
environment.yml - Singularity Definition: Generate a Singularity
.deffile from the analysis dependencies - Docker Compose: Generate Dockerfile and docker-compose.yml for containerised execution
- Nextflow Pipeline: Convert a sequence of shell commands into a Nextflow DSL2 pipeline
- Snakemake Workflow: Alternative workflow export as Snakefile
- Checksum Manifest: SHA-256 hashes for all input/output files
- README Generation: Human-readable reproduction instructions
Dependencies
pyyaml(YAML generation)- Optional:
conda(environment capture),singularity(container build),nextflow(pipeline validation)
Example Queries
- "Make this analysis reproducible as a Nextflow pipeline"
- "Export my current conda environment with pinned versions"
- "Generate a Singularity container for this workflow"
- "Create a checksums file for all input and output data"
Status
Planned -- implementation targeting Week 6 (Apr 3-9).
Signals
- GitHub stars
- 1k
- Forks
- 277
- Last commit
- Sep 2026
Advanced
- Item type
- skill
- Key
repro-enforcer- Source
- github.com/clawbio/clawbio