Revise

Structure point-by-point referee responses with classification, agent routing per revision protocol, and diplomatic drafting.

Input: $ARGUMENTS — path to referee report file(s), optionally followed by paper path.

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Workflow

Step 1: Parse Inputs

1. Read referee report(s) from $ARGUMENTS
2. Read the paper (paper/main.tex or specified path)
3. Read revision protocol from rules
4. Read existing scripts to know what analyses already exist

Step 2: Classify Every Comment

Class	Routing	Action
NEW ANALYSIS	→ Coder agent	Flag for user, create analysis task
CLARIFICATION	→ Writer agent	Draft rewritten section
REWRITE	→ Writer agent	Draft structural revision
DISAGREE	→ User (mandatory)	Draft diplomatic pushback, flag for review
MINOR	→ Writer agent	Draft fix directly

Step 3: Build Tracking Document

Save to quality_reports/referee_response_tracker.md with:

• Summary counts per referee
• Action items by priority (HIGH: new analysis, MEDIUM: clarification, FLAGGED: disagreements, LOW: minor)

Step 4: Dispatch Agents

• CLARIFICATION/REWRITE → dispatch Writer with specific instructions
• NEW ANALYSIS → flag for user approval before dispatching Coder
• DISAGREE → draft diplomatic response, flag prominently for user

Step 5: Draft Response Letter

Generate LaTeX response letter with:

• Summary of major changes
• Point-by-point responses with exact referee quotes
• Color-coded responses
• Page/section references for each change

Step 6: Diplomatic Disagreement Protocol

When DISAGREE: open with acknowledgment, provide evidence, offer partial concession, NEVER say "the referee is wrong." FLAG for user review.

Step 7: Save Outputs

1. Tracker: quality_reports/referee_response_tracker.md
2. Response letter: quality_reports/referee_response_[journal]_[date].tex
3. Revised sections: paper/sections/ (for CLARIFICATION/REWRITE items)

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Principles

• The response letter is the user's voice. Match their tone.
• Never fabricate results. Mark NEW ANALYSIS items as TBD.
• Flag all DISAGREE items. These need human judgment.
• Track everything. Every comment appears in both tracker and response letter.