Snakemake Workflow Manager Skill
SkillDev toolsSnakemake workflow management skill for rule-based pipeline execution
Instructions available. Your AI can read the instructions. Execution depends on the setup they require.
Account requirements not reviewed. Check the skill instructions before use; ahel provides instructions and does not run this skill.
Add ahel to your AI once: Claude, ChatGPT, Cursor, Claude Code or Codex. Then ask it to use this.
Then ask your AI: use the Snakemake Workflow Manager Skill skill
What this skill tells your AI
The instructions your AI receives, as published by a5c-ai/babysitter in library/specializations/domains/science/bioinformatics/skills/snakemake-workflow-manager/SKILL.md and read by ahel’s review.
Purpose
Enable Snakemake workflow management for rule-based pipeline execution.
Capabilities
- DAG-based workflow execution
- Cluster/cloud execution
- Conda environment management
- Checkpointing and resume
- Benchmark collection
- Report generation
Usage Guidelines
- Define rules with clear inputs/outputs
- Use Conda for environment management
- Configure for cluster execution
- Enable checkpointing for large workflows
- Collect benchmarks for optimization
- Generate workflow reports
Dependencies
- Snakemake
- Conda
- Bioconda
Process Integration
- Reproducible Research Workflow (reproducible-research)
- Analysis Pipeline Validation (pipeline-validation)
Signals
- GitHub stars
- 2k
- Forks
- 112
- Last commit
- Sep 2026
Advanced
- Item type
- skill
- Key
snakemake-workflow-manager- Source
- github.com/a5c-ai/babysitter