Databases & data skills.
2,786 databases & data skills, including azure-kusto, google-agents-cli-eval and paper-context-resolver, are listed on ahel today. Each one has a page of its own that says what it does and whether ahel can serve it in Claude, Claude Code, ChatGPT, Codex and Cursor.
Category: Databases & data
2,786 results · page 17 of 93
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bio-metagenomics-abundanceSkillDatabases & data
Species abundance estimation using Bracken with Kraken2 output. Redistributes reads from higher taxonomic levels to species for more accurate estimates. Use when accurate species-level abundances are needed from Kraken2 classification output.
Ready to connect★ 3k
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bio-metagenomics-krakenSkillDatabases & data
Taxonomic classification of metagenomic reads using Kraken2. Fast k-mer based classification against RefSeq database. Use when performing initial taxonomic classification of shotgun metagenomic reads before abundance estimation with Bracken.
Ready to connect★ 3k
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bio-microbiome-taxonomy-assignmentSkillDatabases & data
Taxonomic classification of ASVs using reference databases like SILVA, GTDB, or UNITE. Covers naive Bayes classifiers (DADA2, IDTAXA) and exact matching approaches. Use when assigning taxonomy to ASVs after DADA2 amplicon processing.
Ready to connect★ 3k
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bio-multi-omics-data-harmonizationSkillDatabases & data
Preprocessing and harmonization of multi-omics data before integration. Covers normalization, batch correction, feature alignment, and missing value handling across data types. Use when preparing multi-omics datasets for integration analysis.
Ready to connect★ 3k
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bio-pathway-kegg-pathwaysSkillDatabases & data
KEGG pathway and module enrichment analysis using clusterProfiler enrichKEGG and enrichMKEGG. Use when identifying metabolic and signaling pathways over-represented in a gene list. Supports 4000+ organisms via KEGG online database.
Ready to connect★ 3k
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bio-pathway-reactomeSkillDatabases & data
Reactome pathway enrichment using ReactomePA package. Use when analyzing gene lists against Reactome's curated peer-reviewed pathway database. Performs over-representation analysis and GSEA with visualization and pathway hierarchy exploration.
Ready to connect★ 3k
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bio-proteomics-peptide-identificationSkillDatabases & data
Peptide-spectrum matching and protein identification from MS/MS data. Use when identifying peptides from tandem mass spectra. Covers database searching, spectral library matching, and FDR estimation using target-decoy approaches.
Ready to connect★ 3k
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bio-sequence-statisticsSkillDatabases & data
Calculate sequence statistics (N50, length distribution, GC content, summary reports) using Biopython. Use when analyzing sequence datasets, generating QC reports, or comparing assemblies.
Ready to connect★ 3k
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bio-single-cell-batch-integrationSkillDatabases & data
Integrate multiple scRNA-seq samples/batches using Harmony, scVI, Seurat anchors, and fastMNN. Remove technical variation while preserving biological differences. Use when integrating multiple scRNA-seq batches or datasets.
Ready to connect★ 3k
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bio-single-cell-cell-annotationSkillDatabases & data
Automated cell type annotation using reference-based methods including CellTypist, scPred, SingleR, and Azimuth for consistent, reproducible cell labeling. Use when automatically annotating cell types using reference datasets.
Ready to connect★ 3k
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bio-variant-annotationSkillDatabases & data
Comprehensive variant annotation using bcftools annotate/csq, VEP, SnpEff, and ANNOVAR. Add database annotations, predict functional consequences, and assess clinical significance. Use when annotating variants with functional and clinical information.
Ready to connect★ 3k
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bulk-rna-seq-deconvolution-with-bulk2singleSkillDatabases & data
Turn bulk RNA-seq cohorts into synthetic single-cell datasets using omicverse's Bulk2Single workflow for cell fraction estimation, beta-VAE generation, and quality control comparisons against reference scRNA-seq.
Ready to connect★ 3k
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cbioportal-databaseSkillDatabases & data
Lets your agent look up cancer genomics data such as genes, mutations, and patient tumor studies.
Ready to connect★ 3k
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gnomad-databaseSkillDatabases & data
Lets your agent look up genetics data from the gnomAD database.
Ready to connect★ 3k
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gsea-enrichment-analysisSkillDatabases & data
Gene set enrichment analysis with correct geneset format handling. Critical guidance for loading pathway databases and running enrichment in OmicVerse.
Ready to connect★ 3k
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gtex-databaseSkillDatabases & data
Lets your agent query the GTEx database for human gene expression and tissue data.
Ready to connect★ 3k
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gwas-lookupSkillDatabases & data
Federated variant lookup across 9 genomic databases — GWAS Catalog, Open Targets, PheWeb (UKB, FinnGen, BBJ), GTEx, eQTL Catalogue, and more.
Ready to connect★ 3k
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interpro-databaseSkillDatabases & data
Lets your agent search the InterPro database for protein families, domains, and taxonomy links.
Ready to connect★ 3k
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liquid-biopsy-analytics-agentSkillDatabases & data
The largest open-source medical AI skills library for OpenClaw🦞.
Ready to connect★ 3k
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lobster-bioinformaticsSkillDatabases & data
Run bioinformatics analyses using Lobster AI - single-cell RNA-seq, bulk RNA-seq, literature mining, dataset discovery, quality control, and visualization. Use when analyzing genomics data, searching for papers/datasets, or working with H5AD, CSV, GEO/SRA accessions, or biological data. Requires lob
Ready to connect★ 3k
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medical-research-toolkitSkillDatabases & data
Query 14+ biomedical databases for drug repurposing, target discovery, clinical trials, and literature research. Access ChEMBL, PubMed, ClinicalTrials.gov, OpenTargets, OpenFDA, OMIM, Reactome, KEGG, UniProt, and more through a unified MCP endpoint. Use when researching disease targets, finding appr
Ready to connect★ 3k
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monarch-databaseSkillDatabases & data
Query the Monarch Initiative knowledge graph for disease-gene-phenotype associations across species. Integrates OMIM, ORPHANET, HPO, ClinVar, and model organism databases. Use for rare disease gene discovery, phenotype-to-gene mapping, cross-species disease modeling, and HPO term lookup.
Ready to connect★ 3k
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tooluniverse-cancer-variant-interpretationSkillDatabases & data
Lets your agent look up a cancer mutation and get clinical evidence, treatment options, and resistance info.
Ready to connect★ 3k
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tooluniverse-expression-data-retrievalSkillDatabases & data
Lets your agent find and check gene expression datasets from ArrayExpress and BioStudies.
Ready to connect★ 3k
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tooluniverse-gwas-snp-interpretationSkillDatabases & data
Lets your agent look up what a single genetic SNP does across GWAS, eQTL, regulatory, ClinVar, and frequency databases.
Ready to connect★ 3k
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tooluniverse-metabolomicsSkillDatabases & data
Lets your agent identify metabolites, search HMDB, MetaboLights and KEGG, and analyze metabolomics studies.
Ready to connect★ 3k
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tooluniverse-multi-omics-integrationSkillDatabases & data
Lets your agent combine genomics, proteomics, and other biology data layers for cross-layer analysis.
Ready to connect★ 3k
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tooluniverse-polygenic-risk-scoreSkillDatabases & data
Lets your agent build and interpret polygenic risk scores for complex diseases from GWAS summary statistics.
Ready to connect★ 3k
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mono-repo-integrationSkillDatabases & data
Lets your agent merge a standalone Grails plugin repository into the grails-core monorepo as a Gradle subproject.
Ready to connect★ 3k
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clean-architectureSkillDatabases & data
Lets your agent apply clean architecture agent skill rules to separate business logic from frameworks and databases.
Ready to connect★ 3k
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